Models in Pepakura may have a scaling factor that is not applied to them when exporting. Lets check the scale in Pepakura and adjust our Blender model accordingly.
In Pepakura Designer, go to 2D Menu > Change Scale > Set Scale.
2D Menu > Change Scale > Set Scale
Copy the scale value.
In Blender, right click on your model to select it and then press N to bring up the Object Transformation panel.
Change the scale of all three axes to what you copied from Pepakura.
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